PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G24370.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 359aa    MW: 39599.5 Da    PI: 6.3215
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G24370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC174.51.1e-541882911101
            NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                      ql++fw+++   ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtd++df
  OMERI06G24370.1 188 QLQQFWAERladIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEIFILELTLRSWMHTEENKRRTLQKNDIAAAITRTDMYDF 281
                      89*****98888********************************************************************************** PP

            NF-YC  92 lvdivprdel 101
                      lvdivprd+l
  OMERI06G24370.1 282 LVDIVPRDDL 291
                      ********87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.51E-35151282IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.6E-37202274IPR009072Histone-fold
PfamPF008089.3E-21210273IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGGELSLPRE FKNRERERER GSGETTSPTS ASLSIHPSPP LPLSRRSQSA EAEAELGRGV  60
AGEEVRRRGA DGLGLLCFRR RRAGGGAARR PHRPCFACLH LVLGQAREDM EPSSQPQPAI  120
GVVAGGSQVY PAYPPAATVP TAPAVIPAGS QPAPPFPANP DQLSAQHQLV YQQAQQFHQQ  180
LQQQQQRQLQ QFWAERLADI EQTTDFKNHS LPLARIKKIM KADEDVRMIS AEAPVIFAKA  240
CEIFILELTL RSWMHTEENK RRTLQKNDIA AAITRTDMYD FLVDIVPRDD LKEEGVGLPR  300
AGLPPLGVPA DSYPYGYYVP QQQVPGAGIA YGGQQGHPGY LWQDPQEQQE EPPAEQQSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C9e-431782888119HapE
4g92_C9e-431782888119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16581RRRGADGLGLLCFRRRR
2260266RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644345.11e-179PREDICTED: nuclear transcription factor Y subunit C-2
TrEMBLA0A0E0E5500.0A0A0E0E550_9ORYZ; Uncharacterized protein
STRINGORGLA06G0202500.11e-180(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27033790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.28e-65nuclear factor Y, subunit C2